CDS

Accession Number TCMCG051C06182
gbkey CDS
Protein Id XP_024451595.1
Location complement(join(970499..970516,971016..971118,971215..971408,971831..971909,972064..972263,972369..972593,972682..972825,972902..973408))
Gene LOC7496900
GeneID 7496900
Organism Populus trichocarpa

Protein

Length 489aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA17973
db_source XM_024595827.1
Definition RNA pseudouridine synthase 2, chloroplastic isoform X1 [Populus trichocarpa]

EGGNOG-MAPPER Annotation

COG_category A
Description Pseudouridine synthase
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03009        [VIEW IN KEGG]
KEGG_ko ko:K06180        [VIEW IN KEGG]
EC 5.4.99.23        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway -
GOs GO:0000154        [VIEW IN EMBL-EBI]
GO:0000455        [VIEW IN EMBL-EBI]
GO:0001522        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005829        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006364        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009451        [VIEW IN EMBL-EBI]
GO:0009982        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016072        [VIEW IN EMBL-EBI]
GO:0016853        [VIEW IN EMBL-EBI]
GO:0016866        [VIEW IN EMBL-EBI]
GO:0022613        [VIEW IN EMBL-EBI]
GO:0031118        [VIEW IN EMBL-EBI]
GO:0034470        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034660        [VIEW IN EMBL-EBI]
GO:0042254        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0044085        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGATCTTAACAATGATCCAAGTTACTGCTCAAAGGCAAAAGCACATAATAATAGCAGTAATACACTTTATTCTATTTCGGCCTATTTGCTACAGTTGGCCTCTGGCTCGACAGACATGAAAACTGAAGTCCAGCCCACGGTCAGTTCCACTCTCGATAAACACATCACGAAGTCCAACAGGAAATACGAAAGGAGCAAGAGGATGCTCTCGATTTCCTCTGTATCCCGTTGCTCAGCTCCCTCTTTCTTCCTCTCTCAAAAGCCAACAGCTTCAAGACTCCTCACGGTTCACTCTAGTTCCACAAGGGAGCCTAATTCGAACCAGAATCCTGGCCAAAGAATCAATTACTCTGGTGTAAAACTCGAGGAGTCAGTAGATTCTAAGTCAGGAAAGTCAAGACTTGATTCTTGGATTTCTTCTCGCATTTCTGGCATCAGTAGAGCTCGTGTTCAGTCTAGTATTAAATCAGGACTTGTCTCTGTCAATGGAAAGGTTATCGATAAGGTTTCGCATAATGTAAAAGCTGGAGATAAGGTGAATTGCGTAATTTCAGAGTTGCAACCTTTGAGGGCTGAACCTGAAAATATACCTTTGGATATTGTCTATGAAGATGAGAATGTTCTAGTAGTTAACAAACCTGCCCACATGGTTGTTCATCCTGCGCCTGGTAATGCTACCGGCACGCTGGTTAATGGGATACTACACCATTGTAGTCTTCCAACAGTTTCGAGCCAGGAAGTTTTGTCCGGTGCAGAAGATGTTTCTGATGATGATGATGAAGGGTTATGTTCTAGCTCATACGCTGCGTCTGTTCGACCAGGGATAGTGCATCGGTTGGATAAAGGAACTAGTGGATTGCTTGTTGTTGCTAAGGATGAACATTCGCATGCTCATTTATCTGAGCAATTCAAGCTACACACAATTAAGAGAGTATATGTTAGTCTTACTTGTGGAGTGCCCGCACCAATGGCAGGACGTATTGACGTTCCTATTGGCCGAGATGTGAGTAACAGGATACGTATGGCTGCTATAGTCGAACCAAACCGGGGACAGGCCCGCCATGCTGCTAGTAGGTATAAAGTGATTGAAATACTAGCTGGAGGTGGTTCAGCTCTGGTTGAGTGGAGGTTAGAAACTGGTCGCACTCATCAGATTGTTTTTCTGAAGCAGATCCGTGCACATGCAAAGTACATCGGAATTCCTCTGTTAGGTGATGAGGTTTATGGAGGGACCCAAAACATGGCTTTGTCGCTGCTTCGATCCAGAACCCAGCCTAGCTGTCATCGCCAACTTTCTTTATCACTTTCAGGACTAGAGAGGCCTTGCCTCCATGCTTTGGCTCTCGGGTTCACACATCCATGCACAGGGAAAGAAATACATTTTTCTTGCCCACCTCCTCCAGATTTTACAGAGATCTTGAGCCAGCTTCGGGAGATGGGAACAGAGAAGCTTTCATTCAAGGAATGA
Protein:  
MDLNNDPSYCSKAKAHNNSSNTLYSISAYLLQLASGSTDMKTEVQPTVSSTLDKHITKSNRKYERSKRMLSISSVSRCSAPSFFLSQKPTASRLLTVHSSSTREPNSNQNPGQRINYSGVKLEESVDSKSGKSRLDSWISSRISGISRARVQSSIKSGLVSVNGKVIDKVSHNVKAGDKVNCVISELQPLRAEPENIPLDIVYEDENVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTVSSQEVLSGAEDVSDDDDEGLCSSSYAASVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIKRVYVSLTCGVPAPMAGRIDVPIGRDVSNRIRMAAIVEPNRGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQIVFLKQIRAHAKYIGIPLLGDEVYGGTQNMALSLLRSRTQPSCHRQLSLSLSGLERPCLHALALGFTHPCTGKEIHFSCPPPPDFTEILSQLREMGTEKLSFKE